BtaEX6058194 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031330 | HTR3B
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MAT3]
Coordinates
chr15:24802454-24814188:+
Coord C1 exon
chr15:24802454-24802611
Coord A exon
chr15:24813408-24813618
Coord C2 exon
chr15:24814006-24814188
Length
211 bp
Sequences
Splice sites
3' ss Seq
GACTGTGTGTCCCTGCCCAGGTC
3' ss Score
9.25
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
TGGAAGATGTAGACCTGGCCTTCCTGAGAAGCACAGAAGACATTACACATGACCAAAAGGCATTTTTGAATGACAGTGAGTGGGAACTTCTTTCTGTGTCCTCAACCTACAGCATCCTGCAGAACAGCGCTGGAGATTTTGCACAGATTCAGTTCAAT
Seq A exon
GTCGTGATTCGCAGGCACCCTCTGGTCTACGTGGTGAGCCTGCTGATCCCCAGCATCTTCCTGATGCTCGTGGACCTGGGCAGCTTCTACCTCCCGCCCACCTGCCAAGCCAGGATTCTGTTCAAGACCAGCGTGCTGGTGGGCTACACCGTCTTCAGAGTCAACATGTCTGATGAGGTGCCAAGGAGTGCAGGGAGCACCCCTCTGATTG
Seq C2 exon
GGGTCTTCTTCACGGTCTGCATGGCCTTCTTGGTTCTTAGCTTATCCAAGTCCATCCTGCTGGTCAAATTCCTCTATGATGAGCGGTGCAGCCAGCAGGAGCAGACCCTCCTGTGTCTTCGAGGGGACATGGATACCAACCAGCGTCAAATGGATCCCGGGGCCCAGCTTGCTGGGGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031330-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(25.0=100)
A:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(58.2=80.3)
C2:
PF0293211=Neur_chan_memb=PD(40.8=64.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGACCTGGCCTTCCTGAG
R:
CGCTGGTTGGTATCCATGTCC
Band lengths:
296-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]