Special

HsaEX0030677 @ hg19

Exon Skipping

Gene
Description
5-hydroxytryptamine (serotonin) receptor 3B, ionotropic [Source:HGNC Symbol;Acc:5298]
Coordinates
chr11:113803658-113815477:+
Coord C1 exon
chr11:113803658-113803815
Coord A exon
chr11:113813704-113813914
Coord C2 exon
chr11:113815295-113815477
Length
211 bp
Sequences
Splice sites
3' ss Seq
GACCACTTGTTCCCGGCCAGGTG
3' ss Score
7.75
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
TGGAAGACGTAGACCTGGCCTTTCTGAGGAGCCCAGAAGACATTCAGCATGACAAAAAGGCGTTTTTGAATGACAGTGAGTGGGAACTTCTATCTGTGTCCTCCACATACAGCATCCTGCAGAGCAGCGCTGGAGGATTTGCACAGATTCAGTTTAAT
Seq A exon
GTGGTGATGCGCAGGCACCCCCTGGTCTATGTCGTGAGTCTGCTGATTCCTAGCATCTTTCTCATGCTGGTGGACCTGGGGAGCTTCTACCTGCCACCCAACTGCCGAGCCAGGATTGTGTTCAAGACCAGTGTGCTGGTGGGCTACACCGTCTTCAGGGTCAACATGTCCAACCAGGTGCCACGGAGTGTAGGGAGCACCCCTCTGATTG
Seq C2 exon
GGCACTTCTTCACCATCTGCATGGCCTTCTTGGTTCTCAGCTTAGCTAAGTCCATCGTGTTGGTCAAATTCCTCCATGATGAGCAGCGTGGTGGACAGGAGCAGCCCTTCTTGTGCCTTCGAGGGGACACCGATGCTGACAGGCCTAGAGTGGAACCCAGGGCCCAACGTGCTGTGGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149305_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):

C1:
PF0293118=Neur_chan_LBD=FE(25.0=100)
A:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(57.6=80.3)
C2:
PF0293211=Neur_chan_memb=PD(41.4=66.1)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTAGACCTGGCCTTTCTGA
R:
TTCCACTCTAGGCCTGTCAGC
Band lengths:
307-518
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development