Special

DreEX6084625 @ danRer10

Exon Skipping

Gene
Description
5-hydroxytryptamine (serotonin) receptor 3B [Source:ZFIN;Acc:ZDB-GENE-071012-4]
Coordinates
chr21:23084346-23090243:+
Coord C1 exon
chr21:23084346-23084503
Coord A exon
chr21:23089717-23089927
Coord C2 exon
chr21:23090037-23090243
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGTTTCCTTCTTGAGGTG
3' ss Score
5.08
5' ss Seq
TTGGTACAG
5' ss Score
0.92
Exon sequences
Seq C1 exon
TGAGCGAAGTGGATTTGGCTCTATGGAGGCCTGCTGAGGAAATCGCCAACGACACCAGAGAGTTCATGAATGATGGAGAATGGGAGCTGCTCGGCGTCCCTTCACGCTACTGGACATTGAATCTAGAGGACAGAGACTACGCACAGATTCAGTTTAAT
Seq A exon
GTGCTGATCCGCCGGCGCCCCCTGCTGTACGTGGTAGGTTTACTGATCCCGAGCATCTTCCTCATGGTGGTGGATGTCATCAGCTTCTATCTGCCTCCAAACAGCGGGACTCGCATCACTTTCAAGACCAGCATTCTCCTGGGTTACACTGTAATCAGAGTCAACCTGATGGATGAAATCCCAGCTACAGCCATTAAAACACCTCTCATTG
Seq C2 exon
GGGTCTTCTTTGCCATCTGCATGGCGCTGTTGCTGCTGAGTTTGGCCATGTCCATTTTTGTGGTGAAGCTGTTGCATTATAGTGAGAAGGAAGTGAAGGAGATGTCCATGTCTGCTTGCCTACTGGATAAATATGGCTCAATGGACCAGAGCCTTGAGAGCACATTCACTTCCATGAAGACGCTGGATGATGTGGACCAATCAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061749-'7-7,'7-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0293118=Neur_chan_LBD=FE(25.0=100)
A:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(27.5=80.3)
C2:
PF0293211=Neur_chan_memb=FE(33.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGAGGCCTGCTGAGGAAA
R:
ATGTGCTCTCAAGGCTCTGGT
Band lengths:
302-513
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]