MmuEX6065688 @ mm9
Exon Skipping
Gene
ENSMUSG00000008590 | Htr3b
Description
5-hydroxytryptamine (serotonin) receptor 3B [Source:MGI Symbol;Acc:MGI:1861899]
Coordinates
chr9:48744859-48753755:-
Coord C1 exon
chr9:48753598-48753755
Coord A exon
chr9:48745154-48745364
Coord C2 exon
chr9:48744859-48745041
Length
211 bp
Sequences
Splice sites
3' ss Seq
GCTCCCTTGTTCCCTGCCAGGTA
3' ss Score
9.99
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
TGGAAGACATAGACCTGGGCTTCCTGAGGAATAGAGAAGACATCGAGAATGACAAAAGGGCTTTTATGAATGACAGTGAGTGGCAGCTTCTTTCTGTGTCCTCTACTTACCACATCCGGCAGAGCAGCGCTGGAGACTTCGCACAGATTCGGTTCAAC
Seq A exon
GTAGTGATCCGCAGATGTCCATTGGCCTACGTTGTGAGCCTCTTGATACCTAGCATCTTCCTGATGCTCGTGGACCTGGGAAGCTTCTACTTGCCCCCCAACTGCCGTGCAAGAATTGTGTTCAAGACCAATGTGCTGGTGGGCTATACGGTCTTCAGGGTCAACATGTCTGATGAAGTGCCAAGAAGTGCAGGGTGCACACCTCTGATTG
Seq C2 exon
GGGTCTTCTTTACCGTCTGCATGGCCCTCTTGGTTCTCAGTTTATCCAAATCCATCTTGCTGATCAAATTCCTCTATGAGGAGCGGCACAGTGGGCAAGAACGGCCTCTTATGTGCCTTCAAGGCGACTCTGATGCCGAGGAGTCTAGATTGTACCTCGGGGCTCCACGTGCTGACGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008590-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(25.0=100)
A:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(57.6=80.3)
C2:
PF0293211=Neur_chan_memb=PD(41.4=66.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGACCTGGGCTTCCTGAGG
R:
AGACTCCTCGGCATCAGAGTC
Band lengths:
296-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: