BtaEX6058205 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010791 | HTR3A
Description
Bos taurus 5-hydroxytryptamine (serotonin) receptor 3A (HTR3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001193169]
Coordinates
chr15:24841196-24844028:+
Coord C1 exon
chr15:24841196-24841362
Coord A exon
chr15:24842747-24842791
Coord C2 exon
chr15:24843919-24844028
Length
45 bp
Sequences
Splice sites
3' ss Seq
AGCTCCCGTTCCTTCCACAGGAT
3' ss Score
10.93
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCAAGCACAGGGGGGACCCCCAGCCCCCCAACGCCTCCAGGCCGGCTCTGCTGCGGCTGTCAGATCACCTGCTGGCCAACTACAAGAAGGGCGTGCGGCCCGTGCGGGACTGGAGGACACCGACCACTGTGTCCATCGACGTCATTGTCTACGCCATCCTCAGCGTG
Seq A exon
GATGAGAAGAATCAGGTCCTGACCACCTACATCTGGTATCGGCAG
Seq C2 exon
TACTGGACAGATGAGTTTCTCCAGTGGGACCCTGAGGACTTTGACAACATCACCAAATTGTCCATCCCCACAGACAGCATCTGGGTCCCAGACATCCTTATCAATGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010791-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.7=69.6)
A:
PF0293118=Neur_chan_LBD=FE(6.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACCTGCTGGCCAACTAC
R:
CTCAGGGTCCCACTGGAGAAA
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]