RnoEX0042804 @ rn6
Exon Skipping
Gene
ENSRNOG00000006595 | Htr3a
Description
5-hydroxytryptamine receptor 3A [Source:RGD Symbol;Acc:61818]
Coordinates
chr8:53218984-53221434:-
Coord C1 exon
chr8:53221268-53221434
Coord A exon
chr8:53220057-53220101
Coord C2 exon
chr8:53218984-53219093
Length
45 bp
Sequences
Splice sites
3' ss Seq
AGCCCCTTTTACTTTTACAGGAT
3' ss Score
10.01
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCAGCCGGAGGAGGGCCACCCAGGCCCACAGCACCACCCAGCCTGCTCTGCTGAGGCTGTCAGATCACCTCCTGGCTAACTACAAGAAGGGGGTGCGGCCTGTGCGGGACTGGAGGAAGCCCACCCTGGTCTCCATCGATGTCATCATGTATGCCATCCTCAACGTG
Seq A exon
GATGAGAAGAACCAGGTTCTGACAACCTACATATGGTACCGGCAG
Seq C2 exon
TTCTGGACCGACGAGTTTCTACAGTGGACTCCTGAGGACTTCGACAATGTCACCAAATTGTCCATCCCCACCGACAGCATCTGGGTCCCTGACATCCTCATCAATGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006595-'5-4,'5-2,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.7=69.6)
A:
PF0293118=Neur_chan_LBD=FE(6.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTCTCCATCGATGTCA
R:
AGGATGTCAGGGACCCAGATG
Band lengths:
142-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]