GgaEX6025771 @ galGal4
Exon Skipping
Gene
ENSGALG00000007004 | HTR3A
Description
5-hydroxytryptamine (serotonin) receptor 3A, ionotropic [Source:HGNC Symbol;Acc:HGNC:5297]
Coordinates
chr24:4452543-4453878:+
Coord C1 exon
chr24:4452543-4452669
Coord A exon
chr24:4452883-4452927
Coord C2 exon
chr24:4453769-4453878
Length
45 bp
Sequences
Splice sites
3' ss Seq
CACTCCTCTTGTTCCCACAGGAT
3' ss Score
11.72
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCAGCCCTGCTCCGTCTGTCCGACACGCTGCTGGCTCACTACAGGAGGGGAGTCCGACCCGTGCGGGACTGGCGCACCACCACCACTGTGGCCATCGATGTCATGGTGTATGCCATCCTCAGCGTG
Seq A exon
GATGAGAAAAACCAGGTGCTGACCACCTACATCTGGTACAGACAG
Seq C2 exon
CACTGGACGGATGAGTTCCTCCAGTGGGATCCAGCACACTTCGACAACATCACGCAGATTTCCCTCCCTGCGGAGAGCATCTGGGTGCCCGACATCCTCATCAACGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007004-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.7=90.7)
A:
PF0293118=Neur_chan_LBD=FE(6.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACTACAGGAGGGGAGTC
R:
GAAGTGTGCTGGATCCCACTG
Band lengths:
135-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]