MmuEX0023429 @ mm9
Exon Skipping
Gene
ENSMUSG00000032269 | Htr3a
Description
5-hydroxytryptamine (serotonin) receptor 3A [Source:MGI Symbol;Acc:MGI:96282]
Coordinates
chr9:48714388-48716866:-
Coord C1 exon
chr9:48716700-48716866
Coord A exon
chr9:48715459-48715503
Coord C2 exon
chr9:48714388-48714497
Length
45 bp
Sequences
Splice sites
3' ss Seq
AGCCCCTTTTACTTTCACAGGAT
3' ss Score
8.97
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCAGCCGGAGGAGGGCCACCCAGGCCCGAGATACCACCCAGCCTGCTCTACTAAGGCTGTCAGACCACCTCCTGGCTAACTACAAGAAGGGGGTGCGGCCTGTGCGGGACTGGAGGAAGCCTACTACTGTCTCCATTGATGTCATCATGTATGCCATCCTCAACGTG
Seq A exon
GATGAGAAGAACCAGGTTCTGACCACCTACATATGGTACCGGCAG
Seq C2 exon
TACTGGACTGATGAGTTTCTGCAGTGGACTCCTGAGGACTTCGACAATGTCACCAAATTGTCCATCCCCACAGACAGCATCTGGGTCCCTGACATCCTCATCAATGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032269_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.7=69.6)
A:
PF0293118=Neur_chan_LBD=FE(6.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACCACCTCCTGGCTAAC
R:
CCTCAGGAGTCCACTGCAGAA
Band lengths:
145-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types