DreEX6084634 @ danRer10
Exon Skipping
Gene
ENSDARG00000089212 | htr3a
Description
5-hydroxytryptamine (serotonin) receptor 3A [Source:ZFIN;Acc:ZDB-GENE-071012-5]
Coordinates
chr21:23099375-23102099:+
Coord C1 exon
chr21:23099375-23099538
Coord A exon
chr21:23099626-23099670
Coord C2 exon
chr21:23101990-23102099
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGATTTTGTGTGCCACACAGGAT
3' ss Score
7.34
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TGAAGAAGCTTGGCAATAACACTGGGCGTTTCGCCAATGCCACTCTGGTTCGGCTAAATGAGTTTTTAAGTGCCGGATATAAAAAAGGAGTTCGACCTGTGCGCGACTGGAGGCAGTCAACGACGGTGGCAATTGACCTTATGGTTTATGCCATTCTCAATGTG
Seq A exon
GATGAGAAGAACCAGGTTTTGACAACATATGTGTGGTACAGACAG
Seq C2 exon
CAATGGACAGATGAGTTCCTTATGTGGGATCCTGAGGAATTTGATGAAGTCAAAAAAATTTCCATTCCGACTGCCAACATCTGGATTCCAGATATCCTCATCAATGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089212-'1-2,'1-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=PD(23.8=9.1),PF0293118=Neur_chan_LBD=PU(18.7=70.9)
A:
PF0293118=Neur_chan_LBD=FE(6.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACGACGGTGGCAATTGAC
R:
CCAGATGTTGGCAGTCGGAAT
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]