GgaEX6025771 @ galGal3
Exon Skipping
Gene
ENSGALG00000007004 | F1NGS5_CHICK
Description
NA
Coordinates
chr24:4490498-4491892:+
Coord C1 exon
chr24:4490498-4490683
Coord A exon
chr24:4490897-4490941
Coord C2 exon
chr24:4491783-4491892
Length
45 bp
Sequences
Splice sites
3' ss Seq
CACTCCTCTTGTTCCCACAGGAT
3' ss Score
11.72
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTGCCTCTCCCCATCCCAGTAGGAGCACTGCAGGGGAACCCAGAGCCAGACCCCTCCACGCCAGCCCTGCTCCGTCTGTCCGACACGCTGCTGGCTCACTACAGGAGGGGAGTCCGACCCGTGCGGGACTGGCGCACCACCACCACTGTGGCCATCGATGTCATGGTGTATGCCATCCTCAGCGTG
Seq A exon
GATGAGAAAAACCAGGTGCTGACCACCTACATCTGGTACAGACAG
Seq C2 exon
CACTGGACGGATGAGTTCCTCCAGTGGGATCCAGCACACTTCGACAACATCACGCAGATTTCCCTCCCTGCGGAGAGCATCTGGGTGCCCGACATCCTCATCAACGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007004-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PU(18.7=62.9)
A:
PF0293118=Neur_chan_LBD=FE(6.7=100)
C2:
PF0293118=Neur_chan_LBD=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACTACAGGAGGGGAGTC
R:
GAAGTGTGCTGGATCCCACTG
Band lengths:
135-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]