BtaEX6058339 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016692 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr15:28608645-28612666:-
Coord C1 exon
chr15:28612391-28612666
Coord A exon
chr15:28610601-28610897
Coord C2 exon
chr15:28608645-28608917
Length
297 bp
Sequences
Splice sites
3' ss Seq
GGGCTCCTTGCACCCTGCAGATG
3' ss Score
7.06
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
Exon sequences
Seq C1 exon
ACCCCCTTCACGTGACCCTGACACCAAAGAACCTGAAGACTGGCATCGGCAGCACGGTCATCCTCTCCTGTGCCCTCCTGGGCTCCCCGGAGTTCACCATCCGCTGGTACCGCAACACCGAGCTGGTGCTGCCCAGTGAGGCCATTTCCATCCGCGGGCTCAGCAACGAGACACTGCTCATCACCTCGGCTCAGAAGAGCCACTCAGGAGCCTACCAGTGCTTTGCCACGCGCAAGACCCAGACTGCCCAGGACTTCGCCATCATTGTGCTGGAAG
Seq A exon
ATGGCACTCCCCGCATCGTCTCATCCTTCAGCGAGAAGGTGGTCAACCCTGGGGAGCAGTTCTCACTGATGTGCGCGGCCAAGGGTGCCCCACCCCCCACCATCACCTGGGCCCTGGACGACGAGCCCATCGTGAGGGACGGGAGCCACCGCACCAACCAGTACACCATGTCCGATGGCACCACCATCAGCCACATGAACGTCACGGGGCCCCAGATCCGTGACGGGGGCGTGTACCGGTGTACGGCACGGAACTCGGTGGGCAGTGCTGAATATCAGGCGCGAATAAACGTAAGAG
Seq C2 exon
GCCCCCCCAGCATCCGGGCGATGAGGAACATCACGGCCGTGGCTGGGCGGGACACCCTTGTCAACTGCAGGGTCATCGGCTACCCCTACTACTCCATCAAGTGGTATAAAGACGCCCTCCTGCTGCCCGACAACCACCGGCAGGTGGTGTTCGAGAACGGGACCCTCAAGCTGACGGATGTGCAGAAGGGCATGGACGAGGGAGAGTACCTGTGCAGTGTCCTCATCCAGCCGCAGCTCTCCATCAGCCAGAGCGTCCACGTGGCCGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016692-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=94.6)
A:
PF0767911=I-set=WD(100=95.0)
C2:
PF0767911=I-set=WD(100=96.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAACGAGACACTGCTCAT
R:
CTTCTGCACATCCGTCAGCTT
Band lengths:
304-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]