GgaEX6025826 @ galGal4
Exon Skipping
Gene
ENSGALG00000007314 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr24:5334279-5337085:-
Coord C1 exon
chr24:5336810-5337085
Coord A exon
chr24:5336213-5336509
Coord C2 exon
chr24:5334279-5334551
Length
297 bp
Sequences
Splice sites
3' ss Seq
CTCCCGCTGGGTGCCCCCAGATG
3' ss Score
8.63
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
Exon sequences
Seq C1 exon
ACCCTCTGCGTGTGACCCTCACACCAAAGAAGCTCAAGACGGGCATTGGCAGCACCGTCATCCTCTCTTGTGCCCTCAGTGGGTCACCTGAGTACGTCATCCGCTGGTATCGCAACACAGACCTGGTGGTGGTGGATGACTTCATCTCCATCCGGGGCATCAGCAATGAGACCCTCCTCATCACGGCAGCACAAAAGAGCCACTCTGGAGCCTACCAGTGCTTTGCCACCCGCAAGTCCCAGACAGCACAGGACTTCTCCATCATCACACTGGAGG
Seq A exon
ATGGGACCCCCCGCATCGTCTCCTCCTTCAGCGAGAAGGTGGTGAACCCCGGGGAGCAGTTCTCCCTGATGTGTGCCGCCAAGGGCGCGCCGCCCCCGACCGTGACCTGGGCCCTGGACGACGAGCCCATCCCGCGGGACAACGGGCACCGAACCAACCAGTACACCATGTCGGACGGCACCACGGTGAGCCACATGAACGTCACCAGCCCGCAGATCAAGGACGGCGGCGTGTACCGGTGCACCGCGCGGAACTCGGTGGGCAGCGCCGAATACCAAGCGCGAATAAACGTAAGAG
Seq C2 exon
GTCCCCCGAGCATCCGGGCGATGAAGAACATAACGGCGGTCGCGGGTAGGGACACTTTCATCAACTGCAGGGTGATTGGGTACCCGTATTACTCCATCAAGTGGTACAAGGACTCTTTGCTGCTGCCCGATAACCACCGCCAAGTGGTCTTTGAGAACGGGACCCTGAAGCTGATGGACGTCCAGAAAGGCATGGATGAAGGGGAGTACCTGTGCAGCGTGCTGATCCAGCCCCAGCTCTCCATCAGCCAGAGTGTCCATGTCACGGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314-'6-9,'6-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.350 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.7)
A:
PF0767911=I-set=WD(100=95.0)
C2:
PF0767911=I-set=WD(100=98.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCGCAACACAGACCTGG
R:
TTATCGGGCAGCAGCAAAGAG
Band lengths:
304-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]