GgaEX6025826 @ galGal3
Exon Skipping
Gene
ENSGALG00000007314 | DSCAML1
Description
NA
Coordinates
chr24:5453981-5456787:-
Coord C1 exon
chr24:5456512-5456787
Coord A exon
chr24:5455915-5456211
Coord C2 exon
chr24:5453981-5454253
Length
297 bp
Sequences
Splice sites
3' ss Seq
CTCCCGCTGGGTGCCCCCAGATG
3' ss Score
8.63
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
Exon sequences
Seq C1 exon
ACCCTCTGCGTGTGACCCTCACACCAAAGAAGCTCAAGACGGGCATTGGCAGCACCGTCATCCTCTCTTGTGCCCTCAGTGGGTCACCTGAGTACGTCATCCGCTGGTATCGCAACACAGACCTGGTGGTGGTGGATGACTTCATCTCCATCCGGGGCATCAGCAATGAGACCCTCCTCATCACGGCAGCACAAAAGAGCCACTCTGGAGCCTACCAGTGCTTTGCCACCCGCAAGTCCCAGACAGCACAGGACTTCTCCATCATCACACTGGAGG
Seq A exon
ATGGGACCCCCCGCATCGTCTCCTCCTTCAGCGAGAAGGTGGTGAACCCCGGGGAGCAGTTCTCCCTGATGTGTGCCGCCAAGGGCGCGCCGCCCCCGACCGTGACCTGGGCCCTGGACGACGAGCCCATCCCGCGGGACAACGGGCACCGAACCAACCAGTACACCATGTCGGACGGCACCACGGTGAGCCACATGAACGTCACCAGCCCGCAGATCAAGGACGGCGGCGTGTACCGGTGCACCGCGCGGAACTCGGTGGGCAGCGCCGAATACCAAGCGCGAATAAACGTAAGAG
Seq C2 exon
GTCCCCCGAGCATCCGGGCGATGAAGAACATAACGGCGGTCGCGGGTAGGGACACTTTCATCAACTGCAGGGTGATTGGGTACCCGTATTACTCCATCAAGTGGTACAAGGACTCTTTGCTGCTGCCCGATAACCACCGCCAAGTGGTCTTTGAGAACGGGACCCTGAAGCTGATGGACGTCCAGAAAGGCATGGATGAAGGGGAGTACCTGTGCAGCGTGCTGATCCAGCCCCAGCTCTCCATCAGCCAGAGTGTCCATGTCACGGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314-'5-7,'5-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.350 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.7)
A:
PF0767911=I-set=WD(100=95.0)
C2:
PF0767911=I-set=WD(100=98.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCGCAACACAGACCTGG
R:
TTATCGGGCAGCAGCAAAGAG
Band lengths:
304-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]