RnoEX0029954 @ rn6
Exon Skipping
Gene
ENSRNOG00000016502 | Dscaml1
Description
DS cell adhesion molecule-like 1 [Source:RGD Symbol;Acc:1304887]
Coordinates
chr8:49973736-49978590:+
Coord C1 exon
chr8:49973736-49974011
Coord A exon
chr8:49976208-49976504
Coord C2 exon
chr8:49978318-49978590
Length
297 bp
Sequences
Splice sites
3' ss Seq
GGGCTCCTCGCTCCCTGCAGACG
3' ss Score
8.88
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
Exon sequences
Seq C1 exon
ACCCTCTTCATGTGACCCTGACACCAAAGAAGCTGAAGACGGGCATCGGGAGCACGGTTATCCTGTCCTGCGCCCTCACCGGCTCCCCGGAGTTCACCATCCGCTGGTACCGCAACACAGAACTGGTGCTGCCCGGTGAGGCCATCTCCATCCGCGGGCTTAGCAATGAAACTCTGCTTATCTCCTCGGCACAGAAGAGCCACTCGGGGGCCTACCAGTGCTTCGCCACCCGAAAGGCCCAGACAGCGCAGGACTTTGCCATCATCGTGCTGGAAG
Seq A exon
ACGGCACGCCCCGCATCGTCTCATCCTTCAGCGAGAAGGTGGTCAACCCCGGGGAGCAGTTCTCATTGATGTGTGCCGCCAAGGGCGCCCCGCCCCCCACGGTCACCTGGGCCCTGGACGACGAGCCTGTCGTGCGGGATGGAAGCCACCGCACCAACCAGTACACCATGTCCGACGGCACCACCATCAGCCACATGAACGTCACGGGTCCCCAGATCCGGGATGGGGGCGTGTACCGGTGCACAGCGCGGAACTCGGTGGGCAGTGCTGAATATCAGGCGCGAATAAACGTAAGAG
Seq C2 exon
GACCCCCCAGCATCCGGGCAATGAGGAACATCACGGCAGTCGCCGGGCGGGACACACTCATCAACTGCAGGGTCATCGGCTACCCCTACTACTCTATCAAGTGGTACAAGGATGCCCTGCTGCTACCAGATAACCACCGCCAGGTGGTGTTTGAGAACGGGACCCTCAAGCTGACGGACGTGCAGAAGGGCATGGATGAGGGAGAGTACCTGTGCAGTGTGCTCATCCAGCCGCAGCTTTCCATCAGCCAGAGTGTCCATGTGGCCGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016502_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.270 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=93.5)
A:
PF0767911=I-set=WD(100=95.0)
C2:
PF0767911=I-set=WD(100=96.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCGCAACACAGAACTGGT
R:
TATCTGGTAGCAGCAGGGCAT
Band lengths:
302-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]