DreEX6075332 @ danRer10
Exon Skipping
Gene
ENSDARG00000098057 | dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:ZFIN;Acc:ZDB-GENE-110601-1]
Coordinates
chr15:12181376-12187431:-
Coord C1 exon
chr15:12187156-12187431
Coord A exon
chr15:12185925-12186221
Coord C2 exon
chr15:12181376-12181648
Length
297 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCCCTCTTCTGTCAGATG
3' ss Score
10.85
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
Exon sequences
Seq C1 exon
AGCCTCTGAGAGTCACATTATCTCCCAAGAACCTAAAAACCGGCATTAGCAGCACAGTGATTCTATCCTGTGCCGTTCAGGGCTCACCTCACTTTACCGTCTCCTGGTTCCGCAACACAGAACCCATTGTGCCTGACCAGCATTTCTCCATCCAGGGAGCCCACAATGAGACACTCTTCATCACGGCGGCCCAGAAAAGACACTCAGGGGCATATCAGTGTTTTGCCACCCGCAAGGGTCAAACAGCACAAGATTTCTCAATCATACTGCTTGAGG
Seq A exon
ATGGCACCCCAAGGATTGTCTCGTCTTTCAGTGAACGAGTGGTAGCCCCTGGCGAGCCCTTCTCTCTCATGTGTGCAGCCAAAGGTGCCCCTCCACCCACCATCACCTGGACACTGGATGATGAGCCGGTAGCGCGGGACTCGGCGCACCGGGCCAGCCAGTACACGCTCTCCGACGGCTCCACTGTCTCACATGTCAACGTCACCAACCCCCAGATCCGCGACGGGGGCGTGTACCGCTGCGCCGCACGCAACTCGGCCGGTAGCGCCGAGTACCAAGCGCGCATAAACGTAAGAG
Seq C2 exon
GTCCTCCCAGTATCCGGGCCATGCGGAACATTACAGCTGTGGCTGGACGTAACACATTCATTAATTGTCGTGTGATTGGGTACCCCTATTACTCCATCAAGTGGTATAAAGATGGGATGCTGTTACCAGACAACCATCGCCAGGTTGTATATGAGAATGGCACTCTGAAGTTGAGCGATGTGCAGAAGGGCATGGATGAAGGGGCGTATCTGTGCAGTGTGCTCATCCAACCCCAGCTCTCCATCAGCCAGACTGTCTATGTCACAGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098057-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.170 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=93.5)
A:
PF0767911=I-set=WD(100=95.0)
C2:
PF0767911=I-set=WD(100=96.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACACTCTTCATCACGGCG
R:
CATCCATGCCCTTCTGCACAT
Band lengths:
307-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]