MmuEX0015719 @ mm10
Exon Skipping
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45669996-45674723:+
Coord C1 exon
chr9:45669996-45670271
Coord A exon
chr9:45672626-45672922
Coord C2 exon
chr9:45674451-45674723
Length
297 bp
Sequences
Splice sites
3' ss Seq
GGGCTCCTCGCTCCCCGCAGACG
3' ss Score
9.84
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
Exon sequences
Seq C1 exon
ACCCTCTTCATGTGACCCTGACACCAAAGAAGCTGAAGACGGGCATCGGGAGCACGGTCATCCTATCCTGCGCCCTCACAGGCTCCCCAGAGTTCACCATCCGTTGGTACCGCAACACAGAACTGGTGCTGCCGGGTGAGGCCATCTCCATCCGTGGGCTCAGCAATGAGACTCTGCTCATCTCCTCGGCACAGAAGAGCCACTCGGGAGCCTACCAGTGCTTCGCCACCCGCAAGGCCCAGACAGCCCAGGACTTTGCCATCATTGTGCTGGAAG
Seq A exon
ACGGCACGCCCCGCATCGTCTCATCCTTCAGCGAGAAGGTGGTCAACCCTGGGGAGCAGTTCTCACTGATGTGTGCCGCCAAGGGCGCCCCGCCCCCCACGGTCACCTGGGCCCTGGACGACGAGCCCGTTGTGCGGGACGGAAGCCACCGCACCAACCAGTACACCATGTCCGACGGCACCACCATCAGCCACATGAACGTCACGGGTCCCCAGATCCGGGATGGGGGCGTGTACCGGTGCACAGCGCGGAACTCGGTGGGCAGTGCTGAATATCAGGCGCGAATAAACGTAAGAG
Seq C2 exon
GACCCCCCAGCATCCGGGCAATGAGGAACATCACGGCAGTCGCCGGGCGGGACACACTCATCAACTGCAGGGTCATTGGCTACCCCTACTACTCCATCAAGTGGTACAAGGATGCCCTGCTGCTGCCCGATAACCACCGCCAGGTGGTGTTTGAGAATGGGACTCTCAAGCTGACGGATGTGCAGAAGGGCATGGATGAGGGGGAATACCTGTGCAGTGTTCTCATCCAGCCACAGCTTTCCATCAGCCAGAGTGTCCACGTGGCCGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.270 C2=0.028
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=93.5)
A:
PF0767911=I-set=WD(100=95.0)
C2:
PF0767911=I-set=WD(100=96.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCTGCTCATCTCCTCGG
R:
CATCCATGCCCTTCTGCACAT
Band lengths:
306-603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types