BtaEX6058359 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016692 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr15:28530114-28532630:-
Coord C1 exon
chr15:28532475-28532630
Coord A exon
chr15:28530381-28530411
Coord C2 exon
chr15:28530114-28530232
Length
31 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTACTGTTTTGCAGATG
3' ss Score
10.96
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GCACCATCCCGCCCATCAAGTCTGCACAAGGCGAGGGGGACGACGTGAAGAAGCTGTTCACCATCGGCTGCCCGGTCATCCTGGCCACACTGGGGGTGGCGCTGCTCTTCATCGTTCGCAAGAAGAGGAAAGAGAAGCGGCTGAAGCGGCTCCGAG
Seq A exon
ATGCAAAGAGTTTGGCAGAAATGTTGATAAG
Seq C2 exon
CAAGAACAACCGAAGCTTTGACACCCCTGTGAAGGGGCCACCCCAGGGCCCACGGCTACACATTGACATCCCCAGGGTCCAGCTGCTCATCGAGGACAAGGAGGGCATCAAGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016692-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAAGAGAAGCGGCTGA
R:
GACCCTGGGGATGTCAATGTG
Band lengths:
112-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]