RnoEX0029950 @ rn6
Exon Skipping
Gene
ENSRNOG00000016502 | Dscaml1
Description
DS cell adhesion molecule-like 1 [Source:RGD Symbol;Acc:1304887]
Coordinates
chr8:50049418-50052449:+
Coord C1 exon
chr8:50049418-50049573
Coord A exon
chr8:50052095-50052125
Coord C2 exon
chr8:50052331-50052449
Length
31 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTACTGTCTTGCAGATG
3' ss Score
11.96
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCACCATCCCCCCCATCAAGTCTGCTCAAGGAGAAGGAGATGATGTGAAGAAGTTGTTCACCATCGGCTGTCCAGTCATCCTGGCCACCCTCGGGGTGGCGCTGCTCTTTGTTGTAAGAAAGAAGAGGAAGGAGAAACGGCTGAAGAGGCTCCGAG
Seq A exon
ATGCAAAGAGTTTGGCAGAAATGCTGATAAG
Seq C2 exon
CAAGAACAACCGAAGCTTTGACACTCCTGTGAAAGGGCCACCCCAGGGTCCACGGCTCCACATTGACATCCCGAGGGTTCAGCTGCTCATTGAGGACAAGGAGGGCATCAAGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016502-'47-43,'47-42,48-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAACGGCTGAAGAGGCTC
R:
CCTCAATGAGCAGCTGAACCC
Band lengths:
120-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]