MmuEX6065530 @ mm9
Exon Skipping
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45554910-45557834:+
Coord C1 exon
chr9:45554910-45555065
Coord A exon
chr9:45557496-45557526
Coord C2 exon
chr9:45557716-45557834
Length
31 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTACTGTTTTGCAGATG
3' ss Score
10.96
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCACCATCCCACCCATCAAATCTGCTCAAGGAGAAGGCGATGACGTGAAGAAGCTCTTCACCATCGGCTGCCCAGTCATCCTGGCCACCCTCGGGGTGGCGCTGCTCTTTGTTGTACGAAAGAAGAGGAAGGAGAAGAGGCTGAAGAGGCTACGAG
Seq A exon
ATGCAAAGAGTTTGGCAGAAATGCTGATAAG
Seq C2 exon
CAAGAACAACCGAAGCTTCGACACCCCTGTGAAAGGACCTCCCCAGGGTCCACGGCTCCACATCGACATTCCAAGGGTCCAGCTGCTCATTGAGGACAAGGAAGGCATCAAGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087-'33-35,'33-34,34-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAGAGGCTGAAGAGGC
R:
GTCCTCAATGAGCAGCTGGAC
Band lengths:
124-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: