GgaEX6025842 @ galGal4
Exon Skipping
Gene
ENSGALG00000007314 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr24:5316245-5316820:-
Coord C1 exon
chr24:5316665-5316820
Coord A exon
chr24:5316518-5316548
Coord C2 exon
chr24:5316245-5316363
Length
31 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCTCTTTTAACACAGATG
3' ss Score
9.21
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCACCATCCCACCCATCAAGTCTGCGCAAGGGGAAGGGGACGACGTGAAGAAGCTGTTCACCATTGCCTGCCCCATCATCCTGGCCACGCTGGGAGTGGCCCTACTCTTCATCATCCGCAAGAAGAGGAAGGAGAAGCGGCTGAAGCGGCTGCGAG
Seq A exon
ATGCCAAGAGCTTGGCAGAGATGCTGATCAG
Seq C2 exon
CAAGAATAACCGCAGCTTTGACACGCCGGTGAAGGGGCCCCCGCAAGGCCCCCGCCTGCACATCGACATCCCCCGCGTGCAGCTCCTCATCGAGGACAAGGAGGGCATCAAGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314-'28-32,'28-30,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.366
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGCCTGCCCCATCATCC
R:
GCGTGTCAAAGCTGCGGTTAT
Band lengths:
121-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]