MmuEX6065530 @ mm10
Exon Skipping
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45746827-45749751:+
Coord C1 exon
chr9:45746827-45746982
Coord A exon
chr9:45749413-45749443
Coord C2 exon
chr9:45749633-45749751
Length
31 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTACTGTTTTGCAGATG
3' ss Score
10.96
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCACCATCCCACCCATCAAATCTGCTCAAGGAGAAGGCGATGACGTGAAGAAGCTCTTCACCATCGGCTGCCCAGTCATCCTGGCCACCCTCGGGGTGGCGCTGCTCTTTGTTGTACGAAAGAAGAGGAAGGAGAAGAGGCTGAAGAGGCTACGAG
Seq A exon
ATGCAAAGAGTTTGGCAGAAATGCTGATAAG
Seq C2 exon
CAAGAACAACCGAAGCTTCGACACCCCTGTGAAAGGACCTCCCCAGGGTCCACGGCTCCACATCGACATTCCAAGGGTCCAGCTGCTCATTGAGGACAAGGAAGGCATCAAGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087-'54-65,'54-64,55-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAAGAGGCTGAAGAGGC
R:
GTCCTCAATGAGCAGCTGGAC
Band lengths:
124-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types