DreEX6075348 @ danRer10
Exon Skipping
Gene
ENSDARG00000098057 | dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:ZFIN;Acc:ZDB-GENE-110601-1]
Coordinates
chr15:12142133-12142765:-
Coord C1 exon
chr15:12142610-12142765
Coord A exon
chr15:12142395-12142425
Coord C2 exon
chr15:12142133-12142251
Length
31 bp
Sequences
Splice sites
3' ss Seq
GCTTCTTATTTCCCATGCAGATG
3' ss Score
9.81
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCACAATTCCGCCTATTAAGTCAGCACGAGGGGAAGGAGATGATGTTAAAAAGCTTTTCTCTATCGGCTGTCCTGTCATCCTGGTCACATTGGGTATGGCTCTGCTCTTTATTATCCGCAAGAAACGCAAGGAAAAAAGACTCAAGAGACTCAGAG
Seq A exon
ATGCGAAGAGCTTGGCTGAGATGCTTATCAG
Seq C2 exon
TAAGAACAATCGAAGTTTTGACACTCCAGTAAAAGGCCCACCTCAGGGACCTCGACTACACATTGATATCCCACGCGTGCAGCTTCTTATTGAGGATAAAGAAGGAATCAAACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098057-'33-30,'33-28,34-30=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTCACATTGGGTATGGC
R:
AGGTGGGCCTTTTACTGGAGT
Band lengths:
120-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]