BtaEX6059273 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043981 | SBF2
Description
Bos taurus SET binding factor 2 (SBF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103237]
Coordinates
chr15:43253744-43258978:+
Coord C1 exon
chr15:43253744-43253857
Coord A exon
chr15:43254388-43254516
Coord C2 exon
chr15:43258880-43258978
Length
129 bp
Sequences
Splice sites
3' ss Seq
CACCTTGTTTTTCTTTACAGACA
3' ss Score
10.54
5' ss Seq
GAGGTATAC
5' ss Score
6.64
Exon sequences
Seq C1 exon
GATAAGGAAGTGCGTGCAGTTTTTCTTAGATTATTTGCACAACTTTTCCAAGGATATAGATCATGCTTACAGCTTATAAGAATTCACGCAGAACCAGTAATACATTTTCACAAG
Seq A exon
ACAGCTTTCTTGGGACAGCGTGGTCTAGTTGAGAATGATTTCCTCACTAAAGTTCTCAATGGAATGGCATTTGCAGGTTTTGTTTCAGAAAGAGGTCCTCCCTATAGATCCTGTGATCTCTTTGATGAG
Seq C2 exon
GTGGTAGCTTTTGAAGTAGAGCGAATTAAAGTTGAAGAAAATAACCCAATGAAGATGATAAAGCATGTCAGAGAACTTGCTGAGCAACTATTTAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043981-'23-27,'23-26,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(52.9=100)
A:
PF0345514=dDENN=PD(42.9=69.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGCGTGCAGTTTTTCT
R:
TGCTCAGCAAGTTCTCTGACA
Band lengths:
195-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]