MmuEX6013131 @ mm9
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:117582354-117585079:-
Coord C1 exon
chr7:117584966-117585079
Coord A exon
chr7:117584464-117584592
Coord C2 exon
chr7:117582354-117582452
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCACCTTTTTTTCTTCACAGACA
3' ss Score
11.22
5' ss Seq
GAGGTATAG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GATAAAGAAGTTCGAGCAGTTTTCCTTAGGTTATTTGCACAACTGTTCCAAGGATACAGGTCATGCCTCCAGCTTATCCGGATCCATGCCGAGCCTGTGATACACTTTCACAAA
Seq A exon
ACAGCTTTCTTGGGGCAGCGTGGCTTGGTTGAGAATGATTTCCTCACTAAAGTGCTCAATGGAATGGCATTTGCAGGTTTTGTTTCAGAAAGAGGACCTCCCTATAGAGCCTGTGATCTCTTTGATGAG
Seq C2 exon
TTGGTAGCTTTTGAAGTAGAAAGAATTAAAGTTGAAGAAAAGAATCCACTGAAGATGATAAAGCACATCAGAGAACTTGCTGAGCAGCTATTCAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371-'14-15,'14-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=PU(45.8=97.4)
A:
PF0345514=dDENN=PD(42.9=69.8)
C2:
PF0345514=dDENN=FE(39.8=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTTCGAGCAGTTTTCCT
R:
TGCTCAGCAAGTTCTCTGATGT
Band lengths:
195-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: