GgaEX6036924 @ galGal4
Exon Skipping
Gene
ENSGALG00000005716 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr5:8563545-8565177:+
Coord C1 exon
chr5:8563545-8563658
Coord A exon
chr5:8564193-8564321
Coord C2 exon
chr5:8565079-8565177
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTATCTTTAATGCAGGCA
3' ss Score
8.54
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
Exon sequences
Seq C1 exon
GATAAAGAAGTGCGAGCAATTTTCCTTAGGCTATTTGCACAACTTTTCCAAGGATACCGGTCATGCCTTCAGCTGATCAGAATACACGCTGAACCAGTCATTCATTTCCACAAG
Seq A exon
GCAGCCTTTTTGGGTCAGCGAGGCTTGATTGAGAATGACTTTCTAACCAAAGTTCTCAATGGAATGGCGTTTGCTGGTTTTGTGTCGGAGAGGGGTCCTCCCTTTAGAGCCTGTGATCTTTTTGATGAG
Seq C2 exon
TTGGTAGCCTTTGAAGTTGAAAGAATTAAGGCTGATGAAGGTAATCCACCAAAAATGATAAAGCATGTTAGAGAACTTGCAGAACAGCTCTTCAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716-'23-27,'23-25,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(52.9=100)
A:
PF0345514=dDENN=PD(42.9=69.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAGTGCGAGCAATTTTCCT
R:
ATTTTTGAAGAGCTGTTCTGCA
Band lengths:
210-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]