DreEX6008316 @ danRer10
Exon Skipping
Gene
ENSDARG00000059460 | sbf2
Description
SET binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-030911-10]
Coordinates
chr7:66787895-66795641:+
Coord C1 exon
chr7:66787895-66788008
Coord A exon
chr7:66793603-66793731
Coord C2 exon
chr7:66795543-66795641
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTCACCCTCACCAGGCT
3' ss Score
7.59
5' ss Seq
GAGGTGCAG
5' ss Score
2.03
Exon sequences
Seq C1 exon
GATAAGGAGGTGAGGGCCGTCTTCCTGCGCTTGTTTGCACAACTCTTCCAGGGCTACAGGTCCTGTCTGCAGCTCATTCGCATCCATTCCGAACCCGTGATTCACTTTCACAAG
Seq A exon
GCTGCCTTCCTGGGCCAGCGGGGCCTAATAGAAAACGACTTCCTGACCAAGGTGTTGGATGGCATGGCCTTCGCGGGATTCGTGTCTGAACGGGGACCTCCATACAGGGCCTGCGATTTGTTCGATGAG
Seq C2 exon
CTGGTGGCCTTAGACGTCGACTGCTTTAAGGATGAAGACGAGAACCTGGTCAAACTCCAGAAGCGCTTGAGGGAGCTGTCCGAGCAGCTTTACAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059460-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(52.9=100)
A:
PF0345514=dDENN=PD(42.9=69.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAAGGAGGTGAGGGCCGTC
R:
TTTGTAAAGCTGCTCGGACAG
Band lengths:
210-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]