GgaEX6036924 @ galGal3
Exon Skipping
Gene
ENSGALG00000005716 | SBF2
Description
NA
Coordinates
chr5:10083124-10088559:+
Coord C1 exon
chr5:10083124-10083237
Coord A exon
chr5:10083772-10083900
Coord C2 exon
chr5:10084658-10088559
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTATCTTTAATGCAGGCA
3' ss Score
8.54
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
Exon sequences
Seq C1 exon
GATAAAGAAGTGCGAGCAATTTTCCTTAGGCTATTTGCACAACTTTTCCAAGGATACCGGTCATGCCTTCAGCTGATCAGAATACACGCTGAACCAGTCATTCATTTCCACAAG
Seq A exon
GCAGCCTTTTTGGGTCAGCGAGGCTTGATTGAGAATGACTTTCTAACCAAAGTTCTCAATGGAATGGCGTTTGCTGGTTTTGTGTCGGAGAGGGGTCCTCCCTTTAGAGCCTGTGATCTTTTTGATGAG
Seq C2 exon
TTGGTAGCCTTTGAAGTTGAAAGAATTAAGGCTGATGAAGGTAATCCACCAAAAATGATAAAGCATGTTAGAGAACTTGCAGAACAGCTCTTCAAAAATGTAAGTTTGCTCTACCTATTGCACTTCAGAATTGATAACACTGAAATTTTGGTTTTCTGAGATTGATCCAGTGTCTGAAAACAGAAACGAGTGCTTGTGATAGTCATCTGCATTGTAACTAAAGACTTGGGAACTTTAAATCCCAACAATTTTGAATGTTAAGGAAGTTCAATATATTAATACTGATCTATTAATATTAATAGTGATTTGTCAATGTCCTACTGCTAATTAGCACAGTTTTCTCCATGTGTATTCACTAAATATATGTAAGCTGTTACTTTCTCTGCTGCAACCTGTCTGTGCCAAACAAGTCTCCTATCTTACCTCAACAGTTTCCCATAAGAAAATTGTATATCCAGTTTGGCGTAAGGTATTCTTCCAGCAGATGTGCCCTGCTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716-'11-17,'11-16,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(52.9=100)
A:
PF0345514=dDENN=PD(42.9=69.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCATGCCTTCAGCTGATC
R:
TCACAAGCACTCGTTTCTGTT
Band lengths:
256-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]