RnoEX6004304 @ rn6
Exon Skipping
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:175215306-175218094:-
Coord C1 exon
chr1:175217981-175218094
Coord A exon
chr1:175217458-175217586
Coord C2 exon
chr1:175215306-175215404
Length
129 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTTCTTCTTTACAGACA
3' ss Score
9.79
5' ss Seq
GAGGTATAG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GATAAAGAAGTTCGAGCAGTTTTTCTTAGACTATTTGCACAACTGTTCCAAGGGTACAGGTCATGCCTCCAGCTTATACGGATCCATGCCGAGCCTGTGATACATTTTCACAAA
Seq A exon
ACAGCTTTCTTGGGGCAGCGTGGTTTGGTTGAGAATGATTTCCTCACTAAAGTACTCAATGGAATGGCATTTGCAGGTTTTGTTTCAGAAAGAGGACCTCCCTATAGAGCCTGTGATCTCTTTGATGAG
Seq C2 exon
TTGGTAGCTTTTGAAGTAGAGAGAATTAAAGTTGAAGAAAATAATCCACTGAAGATGATAAAGCACATCAGAGAACTTGCTGAGCAACTCTTCAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812-'21-27,'21-26,22-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345514=dDENN=FE(52.9=100)
A:
PF0345514=dDENN=PD(42.9=69.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAGTTCGAGCAGTTTTTCT
R:
ATTTTTGAAGAGTTGCTCAGCA
Band lengths:
210-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]