BtaEX6059279 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043981 | SBF2
Description
Bos taurus SET binding factor 2 (SBF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103237]
Coordinates
chr15:43214747-43218000:+
Coord C1 exon
chr15:43214747-43214869
Coord A exon
chr15:43216036-43216146
Coord C2 exon
chr15:43217895-43218000
Length
111 bp
Sequences
Splice sites
3' ss Seq
CATGCATCTTTTGTTTTCAGGCT
3' ss Score
9.32
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGAACAAAGAAGGAAGAGACTGAAGGTGAAGTGGAAGTGTCTGGTTTGATTCAGCCTGCGGAAGTGTTTGCTCCCAAAAGCCTGGTGTTGGTATCCAGATTAGATTATCCAGAAATTTTTAGG
Seq A exon
GCTTGCCTGGGTTTGATCTACACTGTATATGTGGACAGTCTGAATGTCTCCTTGGAAAGTCTCATTGCAAACTTGTGTGCGTGTCTTGTCCCAGCGGCTGGAGGGTCTCAG
Seq C2 exon
AAGCTGTTTTCCTTGGGTGCAGGAGACAGACAGCTGATCCAGACTCCCTTGCATGACAGTCTTCCTGTCACAGGAACTAGTGTGGCTCTCCTGTTCCAGCAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043981-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(9.8=43.9)
A:
PF0214116=DENN=FE(19.7=100)
C2:
PF0214116=DENN=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGAAGGAAGAGACTGAAGGTG
R:
TGGAACAGGAGAGCCACACTA
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]