MmuEX0041066 @ mm10
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:110461137-110464707:-
Coord C1 exon
chr7:110464588-110464707
Coord A exon
chr7:110462856-110462966
Coord C2 exon
chr7:110461137-110461242
Length
111 bp
Sequences
Splice sites
3' ss Seq
ACATGCACGGCTCTCTGCAGGCC
3' ss Score
6.24
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGAACGAAGAAGGAAGAGATTGAAGGTGAAGAAGTATCTGGTTTAATTCAACCAGCAGAAGTATTTGCCCCCAAAAGCCTGGTGTTGGTATCCAGATTAGACTATCCAGAAATCTTTAGG
Seq A exon
GCCTGCCTGGGTTTGATCTATACTGTGTATGTGGACAGCATGAGTGTCTCCTTGGAAAGTCTCATCGCAAATCTTTGTGCTTGCCTTGTCCCAGCTGCTGGAGGGTCTCAG
Seq C2 exon
AAGCTATTTTCCTTGGGTGCAGGAGACAGACAACTGATCCAGACACCTTTGCATGACAGCCTTCCTGTCACAGGCACTAGTGTGGCTCTTTTATTTCAGCAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(18.8=45.0)
A:
PF0214116=DENN=FE(19.7=100)
C2:
PF0214116=DENN=FE(19.1=100)
Main Skipping Isoform:
ENSMUST00000033058fB16270
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGAAGAAGGAAGAGATTGA
R:
CTAATTGCTGAAATAAAAGAGCCACA
Band lengths:
226-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types