RnoEX6004300 @ rn6
Exon Skipping
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:175252582-175256117:-
Coord C1 exon
chr1:175255998-175256117
Coord A exon
chr1:175254247-175254357
Coord C2 exon
chr1:175252582-175252687
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCATGTCCCGCTCTCTGCAGGCT
3' ss Score
9.11
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGAACGAAGAAGGAAGAGATCGAGGGTGAAGAAGTATCTGCTTTAATTCAACCTGCAGAAGTATTTGCACCCAAAAGCCTGGTGTTGGTATCCAGATTAGACTATCCAGAAATCTTTAGG
Seq A exon
GCTTGCCTGGGTCTGATCTATACTGTGTACGTGGACAGCCTGAGTGTCTCCTTGGAAAGCCTCATCGCAAATCTTTGTGCTTGCCTTGTTCCAGCTGCTGGAGGGTCTCAG
Seq C2 exon
AAGCTGTTTTCCTTGGGTGCAGGAGACAGACAACTGATTCAGACTCCTTTGCATGACAGCCTCCCTGTTACAGGCACCAGTGTGGCTCTTTTATTTCAGCAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(18.9=45.0)
A:
PF0214116=DENN=FE(19.7=100)
C2:
PF0214116=DENN=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGAAGAAGGAAGAGATCGA
R:
CTAATTGCTGAAATAAAAGAGCCACA
Band lengths:
226-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]