DreEX0064272 @ danRer10
Exon Skipping
Gene
ENSDARG00000059460 | sbf2
Description
SET binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-030911-10]
Coordinates
chr7:66758682-66764498:+
Coord C1 exon
chr7:66758682-66758816
Coord A exon
chr7:66760725-66760835
Coord C2 exon
chr7:66764393-66764498
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTGTTTTCTCCTAGGGC
3' ss Score
11.19
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GGCTCAAAAACACTGGAGGCAGATGGAGAAGAGGAAGAGGAAGAGGAGGAAAATGGCTTGATCCAGCCTGCTGAAGTCTTCGCACCCAAAAGTTTGATTCTCGTCTCCAGACTGGATTACCCAGAAATATTTAGG
Seq A exon
GGCTGTTTGGGGTTGATCTACACTGTGTACATCGACAGCCTGAACTTCCCTCTGGAAGGGCTGGTGGCAAACCTCTTCACGTGCTTTGTCCCATTGGCTGGAGGTTCCCAG
Seq C2 exon
AAACTCTTTTCATTGGGAGCGGGGGACCGTCAGCTCATCCAGACCCCACTGAATGATAGCTTGCCGGTCAGCAGTAAAAGCATAGCACTTCTCTTCCAGCAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059460_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(9.8=40.0)
A:
PF0214116=DENN=FE(19.7=100)
C2:
PF0214116=DENN=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAAAAACACTGGAGGCA
R:
TGCTGGAAGAGAAGTGCTATGC
Band lengths:
236-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]