GgaEX6036929 @ galGal4
Exon Skipping
Gene
ENSGALG00000005716 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr5:8536228-8540394:+
Coord C1 exon
chr5:8536228-8536341
Coord A exon
chr5:8537974-8538084
Coord C2 exon
chr5:8540289-8540394
Length
111 bp
Sequences
Splice sites
3' ss Seq
TATTTCCTGTGTCTTTGTAGGCT
3' ss Score
10.5
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGAACGAAAGAAACTGAAGGAGAAGAGGAGTCTGGTTTAATTGCGCCTGCTGAAGTCTTTGCTCCTAAGAGTCTGGTGCTTGTGTCCAGACTAGATTATCCAGAAATTTTCAGG
Seq A exon
GCTTGCCTTGGACTGATCTATACTGTGTATGTGGACAGCCTGAATGTGTCCCTGGAGGCCCTCATTGCAAATCTCTGTTCATGCCTTGTCCCTGCTTCTGGAGGGTCTCAG
Seq C2 exon
AAATTGTTTTCTTTGGGAGCTGGAGACCGACAACTGATACAGACTCCTCTACATGATAGCCTTCCTGTTACAGGCACCAGCGTGGCTCTTCTCTTTCAGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716-'12-16,'12-14,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(25.7=47.4)
A:
PF0214116=DENN=FE(19.7=100)
C2:
PF0214116=DENN=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGAAAGAAACTGAAGGAGA
R:
AGCTGCTGAAAGAGAAGAGCC
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]