HsaEX6000754 @ hg19
Exon Skipping
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:2135]
Coordinates
chr11:10049999-10052717:-
Coord C1 exon
chr11:10052595-10052717
Coord A exon
chr11:10051312-10051422
Coord C2 exon
chr11:10049999-10050104
Length
111 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTATCTTTTTGCAGGCT
3' ss Score
9.25
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGAACAAAGAAGGAAGAGATTGAAGGTGAAGCAAAAGTGTCTGGTTTAATTCAGCCTGCAGAAGTGTTTGCTCCCAAAAGCCTGGTGTTGGTATCCAGATTATATTATCCAGAAATTTTTAGG
Seq A exon
GCTTGCCTGGGTTTGATCTATACCGTGTATGTGGACAGCCTGAATGTCTCCTTGGAAAGTCTAATTGCAAACCTTTGTGCCTGCCTTGTCCCAGCGGCTGGAGGGTCTCAG
Seq C2 exon
AAGCTGTTTTCTTTGGGTGCAGGAGATAGACAGTTGATCCAGACTCCTTTACATGATAGTCTTCCTATCACGGGCACTAGTGTGGCTCTCCTGTTCCAGCAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=PU(14.2=43.9)
A:
PF0214116=DENN=FE(19.7=100)
C2:
PF0214116=DENN=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGAAGGAAGAGATTGAAGGTGA
R:
TGGAACAGGAGAGCCACACTA
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)