BtaEX6059377 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44396529-44426373:+
Coord C1 exon
chr15:44396529-44396633
Coord A exon
chr15:44421041-44422300
Coord C2 exon
chr15:44426237-44426373
Length
1260 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTTTTCTCCTAGGTC
3' ss Score
12.67
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GGCTCTGTGTTTGCAGAGAGCAGAAATGACCATGACTGCCAACAAGAATTCCAGCATCACCCACGGAGCTGGAGGCACTAAGGCCCCTCGAGGGACTCTGAGCAG
Seq A exon
GTCTCAGTCAGTCTCTCCACCTCCGGTTCTCTCCCCACCGAGGAGTCCCATCTACCCGCTCAGTGACAGTGAGACGTCAGCCTGCAGGTACCCAAGCCGCTCCGGTTCCCGGCTGCTCCTCAAGGACTGGCATCACCGTGAGCCTTCACCCCAGCATCCTCAAGCCCCCTCCCCCAACACCTCACCACCCGTCTGTCCCCTCAAGGCCACCAGCTTTGGTTATCTGGACAGAAGCCCTGTTGTGTGCAAGAGAGAGGACCAGAAGGAGAACATCCGGGGGGCAGCCCAAAATGTAGAGGGCATTGTTGCTTCCCCGCCGCTCGCCCAGAGCACTCCGTCCCTGGGGTCAGCAGTGGGCCCCCGGAGTGTCTTTCTGAACCGCACTGGCCCCCGTGCCCACAGCCTGGGCATCCGGGAGAAGATTTCAGCATGGGAGGGTCGCCAAGAGGCTTCGCCCAGGATGAGCGTGTGTGGAGAGAAGCGGGAGGGCTCTGGGGGTGAGTGGGCGGCCAGTGAGGGCTGCCCCAGCGTGGGCTGCCCCAGCGTGGTGCCGTCCCCCTGCAGCTCGGACAAGACCTTCGACTTCAGGGGCCTCCGGAGGATGAGCAGGACCTTCTCTGAGTGTTCCTACCCTGAGACCGAGGAGGAGGGAGAGGCGCTCCCTGTGCGGGACTCTTTCTACCGGCTGGAGAAACGGCCAGGCCGGAGCGAGCCCAGTGCCTTACTCAGGGGGCACAGCAGCAGGAAGGAGAGCTCAGCGGTGCTGAGTCGGATCCAGAAAATTGAACAGGCCCTGAAGGAGCAGCCAGGCCGGGGGCTCCCCCAGCTCCCCAGCAGCTGCTACAGCGTAGACCGAGGGAGATGGAAGACTGGGACCTTGGGCCCCTTGGAGGAACCCACAGGGAACGCGAGTGTGAGCACTGACAGCCGGGCAGGAGGAGCGGCTGGAGTTGGGGGGGAGGCGGGCCCACCCCCGGAGAGGGAAGGCAGTGGCCCCGCTAAGCCAGGGACCCCTGGAAATAGCCCGACCTCCCAGCTGCTGCCGCCGAAGAGCTCCCCTGATCCCGCTGTGAACCCTGTCCCCAAACCCAAGCGCACCTTTGAATATGAGGCTGACAAGAACCCCAAGAGTAAGCCAAGCAATGGTCTACCTCCTCCACCCACACCTGCTGCTCCACCCCCCCTGCCCTCCACCCCAGCCCCACCCGTCACCCGGAGACCCAAGAAGGACACACGAGGTCACCGCAAGTCCCAGAACAG
Seq C2 exon
AAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCACTGAGAACGGTACTGAGAGCCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAGAATGCCTATGAAGACATCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356-'12-13,'12-9,20-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.855 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGAGCAGAAATGACCATGA
R:
CCACGATGTCTTCATAGGCATTCT
Band lengths:
230-1490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]