DreEX0075567 @ danRer10
Exon Skipping
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28233599-28250140:-
Coord C1 exon
chr7:28250042-28250140
Coord A exon
chr7:28244761-28246011
Coord C2 exon
chr7:28233599-28233738
Length
1251 bp
Sequences
Splice sites
3' ss Seq
TCGTTTACTTTGTTTTTTAGGTG
3' ss Score
10.98
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CAGGTGAGGAGGCTGTCAAAGGGAGATGACTGCCAACAAGAGCTCCAAAACTGCACCAAGAGCAGGAGCGGCTAAAGGTTCACAGGAAAACTCAGACAG
Seq A exon
GTGTCAATCTGTGTCCCCACCACCAATTCTTACTACTGGAAAAGAGCCAGTTTCCTCTTACCTCAGTGGCAGCGAGGATACCAGTCAGCAAGGAAAGTACGGTAAAGCTGATGCTAAACTCTGGACTCAAAAGAACTGGAGCTGTAAGACTGCCAGCTTGAGAAGTGGCGCCTCGCTCTCCACTGACTTTGAATTTCAAAGCAGGCTGACAAAATCTAGGAGCATTAGCTGTCTGGACAAGAAGCTCACCATCCATAAGCCACCAAGTGGTGATAGGCAGGATCAGAAGGAGAATCAGCCACAACAGACCCCCCCTATTGGGGATGGATTGAATACTGGACTGCTCAGCTTAAGTACTACTTCAGTAGGACCTTCTAAGCTTGGGCACAAGCGAACATTCTCACTCAGTCATACAGGGACGTGCACCTCATCAATCGCCATACGCAAAAAGATCTCGCAATGGGAGGGTCGGAAGGAGGCTTTGTCTAGGATGAGCCTTTGCCTTGAGAAGAGGCCTGGAGGTGGGAGCGAGGGTTGCCCAAGCCTGCTGTCCTCACCCTGCAGTGAGACGACCTTTGACTTTAAAGGGGTCAGGAGGATGAGCACGGCATTTTCTGAGTGCTCCTACCCCGAGACTGAGGAAGATGAGCACACATCAGATCGTGAAGCTCCTATAAGGTTCCAGAAGAGGCCTTCAAAGACAGAGTCCTCAGGGATTTTCCTCCGCACATTCTCGGCACGCAAGGAGACCTCAGCCGTGCTCAGCCGCATTCAAAAAATTGAACAAGCCTTGAAGGAAAGTCCTACTTCATCCCCACCACAGTATCTTAGCAATTGCTATGGCCTTGACAAGTCAAGACAGAAGTCTTTTACCATCAGTGGGACAGAGGACTTGGATAGCACTTGTGGCAGCAAGCGGAGTAGCATCTGCTCTGTGGCAACTGAACCTGATGTCTCTCCTGGGTCTGACAGATTGTTCAAGCTCAAGCAAAGATTCAGCATCAGCTCTACCAGGTCAGAGAGCCCAGAACTCCCTTCTGCACAGGACTCTCCTGGAATTACAGTGAACCCTTTGCCCAAACCCAAACGAACGTTTGAGTATGATGCGAACCGGAATCACAAAAGCTTGCTGCCTGGTAATGGACTACCTCCCTCAACTGAATCTCCACCTCCACTTCCTTCCACTCCAGCACCTGCTATAGTGACAAATTCCAAGACTGATGAAAGTAAGCTTAAGAAGACTCAAGACAG
Seq C2 exon
AGAAAGAGAATCCATATGAGGATGTAGATCCAGTGAGGAGATGTCTGGCCAGAAATTCCCGCCTGTTACCCGAGAGGTCCCGGGATTCACTCAACAGGATGTGGACCTCCCAAGAAAGGAAGTCCATAACACCTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.596 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGAGGAGGCTGTCAAAG
R:
TGGGGAGGTGTTATGGACTTCC
Band lengths:
238-1489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]