Special

HsaEX0062015 @ hg38

Exon Skipping

Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8726073-8750725:-
Coord C1 exon
chr11:8750621-8750725
Coord A exon
chr11:8731123-8731209
Coord C2 exon
chr11:8726073-8726209
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTTTTGCCCCCAGGTC
3' ss Score
12.18
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGCTCTGGGTTTGCAGAGAGCCGAAATGACCATGACTGCCAACAAGAATTCCAGCATCACCCACGGAGCTGGTGGCACTAAAGCCCCTCGGGGGACTCTGAGCAG
Seq A exon
GTCTCAGTCAGTCTCTCCACCTCCAGTTCTCTCCCCACCAAGGAGTCCCATCTACCCGCTCAGTGATAGTGAAACCTCAGCCTGCAG
Seq C2 exon
AAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCACTGAGAATGGTACTGAGAACCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAAAATGCCTATGAAGATATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444_MULTIEX2-14/16=13-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=0.840 C2=0.981
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSP00000319678





     
                   









    
Main Skipping Isoform:
ENSP00000435097





     
      









    
Other Inclusion Isoforms:
ENSP00000431139, ENSP00000431252, ENSP00000431332, ENSP00000431673, ENSP00000431990, ENSP00000432872, ENSP00000433008, ENSP00000433175, ENSP00000433346, ENSP00000433528, ENSP00000433647, ENSP00000434332, ENSP00000434930, ENSP00000434935, ENSP00000435180, ENSP00000435228, ENSP00000435562, ENSP00000435925, ENSP00000436363, ENSP00000436748
          









    
Other Skipping Isoforms:
ENSP00000431564, ENSP00000432521, ENSP00000433793, ENSP00000434701, ENSP00000435292, ENSP00000436506, ENSP00000436760, ENSP00000436802, ENSP00000486899
  



Associated events







Conservation


Mouse
(mm10)
chr7:109557375-109557461 
MmuEX0045128
(St5)
Mouse
(mm9)
chr7:116700680-116700975 
HIGH PSI
MmuEX0045128
(St5)
Rat
(rn6)
chr1:174173000-174174250 
HIGH PSI
RnoEX0086444
(St5)
Cow
(bosTau6)
chr15:44421041-44422300 
HIGH PSI
BtaEX6059377
(ST5)
Chicken
(galGal4)
chr5:9113543-9114754 
ALTERNATIVE
GgaEX0028629
(ST5)
Chicken
(galGal3)
chr5:10640757-10641968 
ALTERNATIVE
GgaEX0028629
(ST5)
Zebrafish
(danRer10)
chr7:28244761-28246011 
HIGH PSI
DreEX0075567
(st5)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCGAAATGACCATGACTGCCA

				
R: 
TGGATCCAAACTTGGGTTGGT

				
Band lengths: 
183-270

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development





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