RnoEX0086444 @ rn6
Exon Skipping
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174165890-174187728:-
Coord C1 exon
chr1:174187624-174187728
Coord A exon
chr1:174173000-174174250
Coord C2 exon
chr1:174165890-174166026
Length
1251 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCTTTTTGCTCTTAGGTC
3' ss Score
11.33
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGCTCTGGGCTTGCAGAGAGCCGAAATGACCATGACTGCCAACAAGAACTCCAGTATCACTCATGGAGCCGGAGGCACTAAGGCCCCTCGGGAGACGCTGAGCAG
Seq A exon
GTCTCAGTCAGTTTCTCCGCCTCCAGTTTTATACCCACCAAGAAGTCCCATCTACCCACTCAGTGATAGTGAAACCTCAGCCTGCAGGTATCCCAGCCACTCTAAATCCCAGGTGCTTCTCAAGGACCGGCACTCCCGAAATCCTTCACCTCTAGGTCAAGACCCCTCCCCAGACACTTCACCACCCATCTGTACCCTCAAGGCTACCAGCTTCAGCTACTTGGACAGAACCCCTTCATTACGCAGAAGAGAGGACCAGAGGGAGAGCGTTCAAGGTGCAGTCCAGGATGTAGAGGGTGTGGCTGCTTGCCTTCCCCTTGCCCAGAGCACCCCATTCCTAGGGTCTGGCCCACGGAGTGTCTTGCTGAGTTGCACTGGTACCCGAGCCCACAACCTGGGTATCCGAGAGAAGATTTCAGCATGGGAAGGTCGCCGAGAGGCTTCACCCAGGATGAATCTGTGTGGAGAGAAGCGGGAGGGCCCTGGGAGCGAGAGATCGGTCAGTGAGGGCTGCCCTAGCGTGGGCTGCCCCAGTGTGGTGCCATCCCCTTGCAGCTCAGAAAAGACCTTTGATTTCAAAGGCCTCCGGAGGATGAGCAGGACCTTATCTGAGTGTTCCTACCCTGAGACAGAGGAGGAGTCAGAGGCACTTCCTGTACGGGACTCTTTATACCGGCTGGAGAAGCGTCCAAGCCGGACTGAGCCCAGTGCCTTGCTCAGGGGCCATGGCATCAGGAAAGAGAGCTCAGCAGTGCTGAGCCGGATCCAGAAAATTGAACAAGCCCTAAAGGAGCAGCCTGGCTGTGGTCTCCCCCAGCTCCCTAGCAGCTGCTACAGTGTAGACCATGGGAGGAGGAAGACTGGAACCTTGGGCACCTCGGAGGAGCCAGCAGGAACTGCAAGTGTAAGCTCCAGCAGCAGGGCAGGAGGAGCCACCGGAGTTGCCAGGGAGGCAGGCCCACCCCTGGACAGGGAAGGCAGTGGTTCCATGAAGTCAGAGACTCCTGGAAATAGCTCTAGTCCCCAGCTGCTGCCTTCAAAGAGCTCCCCTGATCCCGCTGTGAACCCTGTTCCCAAACCCAAGCGTACCTTTGAGTACGAGGCTGACAAGAATCCCAAGCCGAAGCCAAGCAATGGTCTACCTCCTTCACCCACACCTGCTGCTCCACCTCCCTTACCTTCCACCCCAGCCCCACCAGTCACCCGGAGGCCAAAGAAGGATATTCGTGGTCACCGGAAGTCACAGAACAG
Seq C2 exon
AAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCTACTGAGAATGGTACTGAGAGTCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAGAATGCATATGAAGATATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.778 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENSRNOT00000064902fB14404
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGGCTTGCAGAGAGC
R:
CCACAATATCTTCATATGCATTCTCT
Band lengths:
240-1491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]