MmuEX0045129 @ mm9
Exon Skipping
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:116696489-116700975:-
Coord C1 exon
chr7:116700680-116700975
Coord A exon
chr7:116699725-116700394
Coord C2 exon
chr7:116696489-116696625
Length
670 bp
Sequences
Splice sites
3' ss Seq
AAAGACCTTTGATTTCAAAGGCC
3' ss Score
4.13
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCTCAGTCAGTCTCTCCACCTCCAGTTTTATACCCACCAAGAAGTCCCATCTACCCACTCAGTGACAGTGAAACCTCAGCCTGCAGGTACCCCAGCCACTCTAAATCCCAGGTGCTCCTCAAGGACCGGCATTCTCGAAATCCTTCACTCCTAGGTCAAGATCCGTCCCCAGAAACCTCACCACCCATTTGTACCCTCAAGGCTACCAGCTTCAGCTATTTGGACAGAACCCCTTCATTACGCAAAAGAGAGGACCAGAAGGAGACTGTCCAGGGTGCAGTCCAGGATGTAGAAG
Seq A exon
GCCTCCGGAGGATGAGCAGGACCTTCTCTGAGTGTTCCTACCCCGAGACAGAGGAGGAGGCAGAGGCACTTCCTGGACGGGACTCTTTATACCGGCTGGAGAAGCGTCCAGGCCGGACTGAGCCCAGTGCCTTGCTCAGGGGGCATGGCATCAGGAAAGAGAGCTCAGCAGTGCTGAGCCGGATCCAGAAGATCGAACAAGCCCTAAAGGAGCAGCCTGGCCGGGGTCTCCCCCAGCTCCCTAGCAGCTGCTACAGTGTAGACCAAGGGAGGAGGAAGACTGGAACTTTGGGCACCTTGGAGGAGCCAACAGGAACTGCAAGTGTAAGCCCCAGCAGCAGGGCAGGAGGAGTGGCCGGAGTTGCTGGGGAGGCAGGCCCACCCCTGGACAGGGAAGGCAGTGCTTCCATGAAGTCAGAGACCCCTGGAAATAGCTCCAGTCCCCAGCTGCTGCCTCCGAAGAGCTCCCCTGATCCAGCTGTGAACCCTGTTCCCAAACCCAAGCGTACCTTTGAGTACGAGGCTGACAAGAATCCTAAGACTAAGCCAAGCAATGGTCTACCTCCTTCACCCACACCTGCTGCTCCACCCCCCTTGCCTTCCACCCCAGCCCCACCAGTCACCCGGAGACCCAAGAAGGACATGCGTGGTCACCGGAAGTCACAGAACAG
Seq C2 exon
AAAATCCTTCGAGTTTGAGGATGCATCCAGTCTCCAATCCCTGTATCCCTCTTCTCCTACTGAGAATGGTACTGAGAGTCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAGAATGCCTATGAAGATATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=0.764 C2=0.900
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCACCAAGAAGTCCCATCT
R:
ACTTGGGTTGACTCTCAGTACCA
Band lengths:
353-1023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: