GgaEX0028629 @ galGal4
Exon Skipping
Gene
ENSGALG00000005927 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr5:9090440-9117938:+
Coord C1 exon
chr5:9090440-9090544
Coord A exon
chr5:9113543-9114754
Coord C2 exon
chr5:9117802-9117938
Length
1212 bp
Sequences
Splice sites
3' ss Seq
TTATTTCTTTCTGCTTCTAGGTG
3' ss Score
11.93
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
ATATCCAGATTTCTAGAAAGCAGAAATGACCATGACTGCCAACAAGAATGCCAATATCAACAGCAGAGCTGGAGGGAGTAAAGTGCCTCGGGACAGTCTGGATAG
Seq A exon
GTGTCAGTCAGTCTCTCCACCGCCTCTTTTGTCCCCGCCAAGAAGCCCAGCCTACCCGCTCAGTGACAGCGAGGACTCTTGCCACTCCACGCGTCTCACCAAGGCCTCTGGCTCCCGGCTGCGCCTCAAGGACTGGAGCAGCCGCACATCCGCGCTGCACAGCACCTCCACCAGCCCATCAGACACCGATTCTCCCAGCCACCCTCTCAAAGCCGTCAGCGTGGGAGCTTTGGATAAAAGGCTGTCTGTGTTCAAGGCGGAGGACCAAAAGGAGAGCCCGAAGGAGGCTCAGGATGGGGATGCAATAGGGAGCCATCCTCTGGCCCGGAGCACTCTGTCCCTAGGCACTGCTGTGAACCTGAGGAACCTATCCCTTAGCCGGACGAGCGTCCGCTCCCAGGTGCTGGACATCAGGCAGAAGATCACAGAATGGGAGTGTCGTCGGGAGCCGTCTCCCAGGATGAGCACATGTGTGGACAAGAGGGATGCTGGGGAGAGGTCAGGCAGTGAGAGCTGCCCTAGCGTGCTGACCTCTCCTTGCAGCGACAAGACGTTTGATTTTAAAGGGTTCAGAAGAATGAGCCGAACGTTTTCTGAGTGTTCTTACCCAGAAACAGAGGAGGAGGAACTGCTGGACAGGGATTCCTGCCATCGGGTGGAAAAGAGACCAGGCAGGAGCGACCTTCCTTCTGCCGCTTTTCTCAAGGGCCACGTGAGGAAAGAGTCCTCTGCTGTGCTCAACAGAATACAGAAGATCGAGCAAGCACTAAAAGAGCAGCCTGGCAGGGGCCTCCCCCAGTTACCGAGCAGCTGTTACAGTGTCGATAAAGGGAGGAAAAAGTCTCTGAGTGCAGTGGAGGGACTGAGTGAAAACCTAAGTAATAGCAAAGGAGGGAGCGTTATTTTGGGGAGTGAACCAGAAACACCTACCGAGGCTGAGATAAGCAGTAAGACAAAGCAGGGAGTTACCTCAAACTCTGCCGACCCTAAACTGCTTCTTGAAAGCTCAGCGAACGCTGTGGTGAATCCTGTCCCCAAGCCCAAACGCACCTTTGAGTACGAAGCGGACAAAACCCACAAAAGTAAACCAAGCAATGGCCTACCTCCATCTCCAACGCCTGCTGCTCCTCCTCCCCTCCCGTCCACCCCTGCACCCCCAGTGACCAGACGGCAGAAGAAAGACTCACGCTTTCACAGAAAATCCCAGAATAG
Seq C2 exon
AAAATCCTTTGAGTTTGAGGATGCGTCAAGTCTGCAGTCATTGTACCCTTCCTCCCCAACTGAAAATGGGACTGAGAGCCAGCATAAATTTGGATCTAAGAGCACTTTAGAAGAAAATGCCTATGAAGACATTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927_MULTIEX1-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.714 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTCTAGAAAGCAGAAATGACCA
R:
TGTCTTCATAGGCATTTTCTTCTAAA
Band lengths:
230-1442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]