GgaEX0028629 @ galGal3
Exon Skipping
Gene
ENSGALG00000005927 | ST5
Description
NA
Coordinates
chr5:10617654-10645152:+
Coord C1 exon
chr5:10617654-10617758
Coord A exon
chr5:10640757-10641968
Coord C2 exon
chr5:10645016-10645152
Length
1212 bp
Sequences
Splice sites
3' ss Seq
TTATTTCTTTCTGCTTCTAGGTG
3' ss Score
11.93
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
ATATCCAGATTTCTAGAAAGCAGAAATGACCATGACTGCCAACAAGAATGCCAATATCAACAGCAGAGCTGGAGGGAGTAAAGTGCCTCGGGACAGTCTGGATAG
Seq A exon
GTGTCAGTCAGTCTCTCCACCGCCTCTTTTGTCCCCGCCAAGAAGCCCAGCCTACCCGCTCAGTGACAGCGAGGACTCTTGCCACTCCACGCGTCTCACCAAGGCCTCTGGCTCCCGGCTGCGCCTCAAGGACTGGAGCAGCCGCACATCCGCGCTGCACAGCACCTCCACCAGCCCATCAGACACCGATTCTCCCAGCCACCCTCTCAAAGCCGTCAGCGTGGGAGCTTTGGATAAAAGGCTGTCTGTGTTCAAGGCGGAGGACCAAAAGGAGAGCCCGAAGGAGGCTCAGGATGGGGATGCAATAGGGAGCCATCCTCTGGCCCGGAGCACTCTGTCCCTAGGCACTGCTGTGAACCTGAGGAACCTATCCCTTAGCCGGACGAGCGTCCGCTCCCAGGTGCTGGACATCAGGCAGAAGATCACAGAATGGGAGTGTCGTCGGGAGCCGTCTCCCAGGATGAGCACATGTGTGGACAAGAGGGATGCTGGGGAGAGGTCAGGCAGTGAGAGCTGCCCTAGCGTGCTGACCTCTCCTTGCAGCGACAAGACGTTTGATTTTAAAGGGTTCAGAAGAATGAGCCGAACGTTTTCTGAGTGTTCTTACCCAGAAACAGAGGAGGAGGAACTGCTGGACAGGGATTCCTGCCATCGGGTGGAAAAGAGACCAGGCAGGAGCGACCTTCCTTCTGCCGCTTTTCTCAAGGGCCACGTGAGGAAAGAGTCCTCTGCTGTGCTCAACAGAATACAGAAGATCGAGCAAGCACTAAAAGAGCAGCCTGGCAGGGGCCTCCCCCAGTTACCGAGCAGCTGTTACAGTGTCGATAAAGGGAGGAAAAAGTCTCTGAGTGCAGTGGAGGGACTGAGTGAAAACCTAAGTAATAGCAAAGGAGGGAGCGTTATTTTGGGGAGTGAACCAGAAACACCTACCGAGGCTGAGATAAGCAGTAAGACAAAGCAGGGAGTTACCTCAAACTCTGCCGACCCTAAACTGCTTCTTGAAAGCTCAGCGAACGCTGTGGTGAATCCTGTCCCCAAGCCCAAACGCACCTTTGAGTACGAAGCGGACAAAACCCACAAAAGTAAACCAAGCAATGGCCTACCTCCATCTCCAACGCCTGCTGCTCCTCCTCCCCTCCCGTCCACCCCTGCACCCCCAGTGACCAGACGGCAGAAGAAAGACTCACGCTTTCACAGAAAATCCCAGAATAG
Seq C2 exon
AAAATCCTTTGAGTTTGAGGATGCGTCAAGTCTGCAGTCATTGTACCCTTCCTCCCCAACTGAAAATGGGACTGAGAGCCAGCATAAATTTGGATCTAAGAGCACTTTAGAAGAAAATGCCTATGAAGACATTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.712 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTCTAGAAAGCAGAAATGACCA
R:
TGTCTTCATAGGCATTTTCTTCTAAA
Band lengths:
230-1442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]