BtaEX6059378 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44335342-44422300:+
Coord C1 exon
chr15:44335342-44335480
Coord A exon
chr15:44396529-44396633
Coord C2 exon
chr15:44421041-44422300
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGGTCTTGTCTTCTTTGCAGGGC
3' ss Score
10.02
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAAGGAGCTGTGGGAAGCTCGCAGCAGGTATCAGAGCCGGAGCGAGTGGATTTGGGGGCCCTGGGCTCCCTAATAGACTGTGGTGTGAGCCAGACTCTGCCGAGAATGGAGTGGGCAGGAAAGCACCGGGACTTTCAG
Seq A exon
GGCTCTGTGTTTGCAGAGAGCAGAAATGACCATGACTGCCAACAAGAATTCCAGCATCACCCACGGAGCTGGAGGCACTAAGGCCCCTCGAGGGACTCTGAGCAG
Seq C2 exon
GTCTCAGTCAGTCTCTCCACCTCCGGTTCTCTCCCCACCGAGGAGTCCCATCTACCCGCTCAGTGACAGTGAGACGTCAGCCTGCAGGTACCCAAGCCGCTCCGGTTCCCGGCTGCTCCTCAAGGACTGGCATCACCGTGAGCCTTCACCCCAGCATCCTCAAGCCCCCTCCCCCAACACCTCACCACCCGTCTGTCCCCTCAAGGCCACCAGCTTTGGTTATCTGGACAGAAGCCCTGTTGTGTGCAAGAGAGAGGACCAGAAGGAGAACATCCGGGGGGCAGCCCAAAATGTAGAGGGCATTGTTGCTTCCCCGCCGCTCGCCCAGAGCACTCCGTCCCTGGGGTCAGCAGTGGGCCCCCGGAGTGTCTTTCTGAACCGCACTGGCCCCCGTGCCCACAGCCTGGGCATCCGGGAGAAGATTTCAGCATGGGAGGGTCGCCAAGAGGCTTCGCCCAGGATGAGCGTGTGTGGAGAGAAGCGGGAGGGCTCTGGGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356-'4-9,'4-7,12-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.855
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGGCTCCCTAATAGAC
R:
CTTGAGGATGCTGGGGTGAAG
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]