GgaEX0008367 @ galGal3
Exon Skipping
Gene
ENSGALG00000005927 | ST5
Description
NA
Coordinates
chr5:10585878-10640857:+
Coord C1 exon
chr5:10585878-10585978
Coord A exon
chr5:10617654-10617758
Coord C2 exon
chr5:10640757-10640857
Length
105 bp
Sequences
Splice sites
3' ss Seq
AGTGACTTTTCTTCTCACAGATA
3' ss Score
8.89
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TTCTTAATTACAGAAACATGAAAGGATGCAGGAAGTCCTGAATGACCGCAATGAATACCTGTGATCATTAAGTCACTGCCTGAGTACTGGGAGAGAGCAAG
Seq A exon
ATATCCAGATTTCTAGAAAGCAGAAATGACCATGACTGCCAACAAGAATGCCAATATCAACAGCAGAGCTGGAGGGAGTAAAGTGCCTCGGGACAGTCTGGATAG
Seq C2 exon
GTGTCAGTCAGTCTCTCCACCGCCTCTTTTGTCCCCGCCAAGAAGCCCAGCCTACCCGCTCAGTGACAGCGAGGACTCTTGCCACTCCACGCGTCTCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927-'0-2,'0-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGAAACATGAAAGGATGCAGGA
R:
TGGTGAGACGCGTGGAGT
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]