RnoEX0086431 @ rn6
Exon Skipping
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174173000-174234408:-
Coord C1 exon
chr1:174234319-174234408
Coord A exon
chr1:174187624-174187728
Coord C2 exon
chr1:174173000-174174250
Length
105 bp
Sequences
Splice sites
3' ss Seq
TACAGGTGTCTTCTTTTCAGGGC
3' ss Score
8.6
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCAGACAGGAGACTGCTTAGGCTCTGGCACTAGTACCATGGGACCCTGTACTGGTTAAAAGCCGGCTCCAGGACCTGAACAGACAACAAG
Seq A exon
GGCTCTGGGCTTGCAGAGAGCCGAAATGACCATGACTGCCAACAAGAACTCCAGTATCACTCATGGAGCCGGAGGCACTAAGGCCCCTCGGGAGACGCTGAGCAG
Seq C2 exon
GTCTCAGTCAGTTTCTCCGCCTCCAGTTTTATACCCACCAAGAAGTCCCATCTACCCACTCAGTGATAGTGAAACCTCAGCCTGCAGGTATCCCAGCCACTCTAAATCCCAGGTGCTTCTCAAGGACCGGCACTCCCGAAATCCTTCACCTCTAGGTCAAGACCCCTCCCCAGACACTTCACCACCCATCTGTACCCTCAAGGCTACCAGCTTCAGCTACTTGGACAGAACCCCTTCATTACGCAGAAGAGAGGACCAGAGGGAGAGCGTTCAAGGTGCAGTCCAGGATGTAGAGGGTGTGGCTGCTTGCCTTCCCCTTGCCCAGAGCACCCCATTCCTAGGGTCTGGCCCACGGAGTGTCTTGCTGAGTTGCACTGGTACCCGAGCCCACAACCTGGGTATCCGAGAGAAGATTTCAGCATGGGAAGGTCGCCGAGAGGCTTCACCCAGGATGAATCTGTGTGGAGAGAAGCGGGAGGGCCCTGGGAGCGAGAGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934-'13-9,'13-7,19-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.778
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGACTGCTTAGGCTCTGG
R:
GGAGGGGTCTTGACCTAGAGG
Band lengths:
253-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]