DreEX6005378 @ danRer10
Exon Skipping
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28244761-28278200:-
Coord C1 exon
chr7:28278166-28278200
Coord A exon
chr7:28250042-28250137
Coord C2 exon
chr7:28244761-28246011
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATAAATGCTTTTTTAAGCAGGTG
3' ss Score
5.49
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATAAAATGGCTCGAACGGTGGGACGATTCGTTCAG
Seq A exon
GTGAGGAGGCTGTCAAAGGGAGATGACTGCCAACAAGAGCTCCAAAACTGCACCAAGAGCAGGAGCGGCTAAAGGTTCACAGGAAAACTCAGACAG
Seq C2 exon
GTGTCAATCTGTGTCCCCACCACCAATTCTTACTACTGGAAAAGAGCCAGTTTCCTCTTACCTCAGTGGCAGCGAGGATACCAGTCAGCAAGGAAAGTACGGTAAAGCTGATGCTAAACTCTGGACTCAAAAGAACTGGAGCTGTAAGACTGCCAGCTTGAGAAGTGGCGCCTCGCTCTCCACTGACTTTGAATTTCAAAGCAGGCTGACAAAATCTAGGAGCATTAGCTGTCTGGACAAGAAGCTCACCATCCATAAGCCACCAAGTGGTGATAGGCAGGATCAGAAGGAGAATCAGCCACAACAGACCCCCCCTATTGGGGATGGATTGAATACTGGACTGCTCAGCTTAAGTACTACTTCAGTAGGACCTTCTAAGCTTGGGCACAAGCGAACATTCTCACTCAGTCATACAGGGACGTGCACCTCATCAATCGCCATACGCAAAAAGATCTCGCAATGGGAGGGTCGGAAGGAGGCTTTGTCTAGGATGAGCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363-'1-3,'1-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.596
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGTGGGACGATTCGTTC
R:
TGGCAGTCTTACAGCTCCAGT
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]