GgaEX0008367 @ galGal4
Exon Skipping
Gene
ENSGALG00000005927 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr5:9059014-9114754:+
Coord C1 exon
chr5:9059014-9059101
Coord A exon
chr5:9090440-9090544
Coord C2 exon
chr5:9113543-9114754
Length
105 bp
Sequences
Splice sites
3' ss Seq
AGTGACTTTTCTTCTCACAGATA
3' ss Score
8.89
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
AAACATGAAAGGATGCAGGAAGTCCTGAATGACCGCAATGAATACCTGTGATCATTAAGTCACTGCCTGAGTACTGGGAGAGAGCAAG
Seq A exon
ATATCCAGATTTCTAGAAAGCAGAAATGACCATGACTGCCAACAAGAATGCCAATATCAACAGCAGAGCTGGAGGGAGTAAAGTGCCTCGGGACAGTCTGGATAG
Seq C2 exon
GTGTCAGTCAGTCTCTCCACCGCCTCTTTTGTCCCCGCCAAGAAGCCCAGCCTACCCGCTCAGTGACAGCGAGGACTCTTGCCACTCCACGCGTCTCACCAAGGCCTCTGGCTCCCGGCTGCGCCTCAAGGACTGGAGCAGCCGCACATCCGCGCTGCACAGCACCTCCACCAGCCCATCAGACACCGATTCTCCCAGCCACCCTCTCAAAGCCGTCAGCGTGGGAGCTTTGGATAAAAGGCTGTCTGTGTTCAAGGCGGAGGACCAAAAGGAGAGCCCGAAGGAGGCTCAGGATGGGGATGCAATAGGGAGCCATCCTCTGGCCCGGAGCACTCTGTCCCTAGGCACTGCTGTGAACCTGAGGAACCTATCCCTTAGCCGGACGAGCGTCCGCTCCCAGGTGCTGGACATCAGGCAGAAGATCACAGAATGGGAGTGTCGTCGGGAGCCGTCTCCCAGGATGAGCACATGTGTGGACAAGAGGGATGCTGGGGAGAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927-'0-15,'0-10,13-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.714
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGCCTGAGTACTGGGA
R:
CTGACGGCTTTGAGAGGGTG
Band lengths:
249-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]