MmuEX0045123 @ mm10
Exon Skipping
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:109556211-109616553:-
Coord C1 exon
chr7:109616298-109616553
Coord A exon
chr7:109570007-109570111
Coord C2 exon
chr7:109556211-109557461
Length
105 bp
Sequences
Splice sites
3' ss Seq
CAGGCGTGTCTTCTTTTCAGGGC
3' ss Score
9.39
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGAGCAAGCCTGCAAGCGTGTGTGCAGCCTAGGACAGGTCTCCATGACAACCAGCCTGACTGGCTAGCTGCGCTAGCTCTGCTCACTTGGCTGGAAGGAGTGTCTTGAAAGGTCAGAGGAAGGAGCTGTGGGAAGTTCGCAGCAGGTACTGGAGCTTAAGCCAGTGGATCTGGGGGCCCTGGGCTCCCTAAGCGACTGTGGTGTGAGCCAGCCTCTGTGGAGAATGGAGTGGGCAAGAAATCACCCGGACTACCAG
Seq A exon
GGCTCTGGGTTTGCAGAGAGCCGAAATGACCATGACTGCCAACAAGAACTCCAGCATCACTCATGGAACCGGAGGCACTAAGGCCCCTCGGGAGACGCTGAGCAG
Seq C2 exon
GTCTCAGTCAGTCTCTCCACCTCCAGTTTTATACCCACCAAGAAGTCCCATCTACCCACTCAGTGACAGTGAAACCTCAGCCTGCAGGTACCCCAGCCACTCTAAATCCCAGGTGCTCCTCAAGGACCGGCATTCTCGAAATCCTTCACTCCTAGGTCAAGATCCGTCCCCAGAAACCTCACCACCCATTTGTACCCTCAAGGCTACCAGCTTCAGCTATTTGGACAGAACCCCTTCATTACGCAAAAGAGAGGACCAGAAGGAGACTGTCCAGGGTGCAGTCCAGGATGTAGAAGGTGTGGCTGCTTGCCTCCCCCTTGCCCAGAGCACCCCATTCCTAGGGGCCGGGTCTCGGAGTGTCTTGCTGAGTTGCACTGGTACCCGAGCCCATAGCCTGGGTATCCGAGAGAAGATCTCAGCATGGGAAGGTCGCCGAGAGGCTTCACCCAGGATGAGTCTGTGTGGAGAGAAGCGGGAGGGCCCTGGGAGCGAGTGGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024-'5-20,'5-19,17-20
Average complexity
C2
Mappability confidence:
95%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.763
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGAATGGAGTGGGCAAG
R:
GCTGAAGCTGGTAGCCTTGAG
Band lengths:
257-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types