BtaEX6060092 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57336348-57347590:+
Coord C1 exon
chr15:57336348-57336500
Coord A exon
chr15:57346606-57346790
Coord C2 exon
chr15:57347469-57347590
Length
185 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCTTGTTGCCCACAGACC
3' ss Score
11.42
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAACACTGGATTTCCCCGCAGAACGCCACGCACATCAAGCCCATGCACCCCACTTCAGTCCACGGCGTGGAGGACATGATCCGCTTGGGGGACCTCAATGAAGCCGGCATCCTGCGCAACCTGCTCATTAGATACCGAGACCATCTCATCTAC
Seq A exon
ACCTACACGGGCTCCATCTTGGTGGCTGTGAACCCCTACCAGCTGCTCTCTATCTACTCGCCAGAACACATCCGCCAGTATACCAACAAGAAGATTGGGGAGATGCCCCCCCACATCTTTGCCATTGCTGACAATTGCTACTTCAATATGAAGCGCAACAGCCGTGACCAGTGCTGCATCATCAG
Seq C2 exon
TGGGGAGTCTGGGGCAGGGAAGACAGAGAGCACGAAGCTGATCCTGCAGTTCCTGGCGGCCATCAGCGGGCAGCACTCGTGGATTGAACAGCAGGTGCTGGAAGCAACTCCCATCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=54.9)
A:
PF0006316=Myosin_head=FE(9.2=100)
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGATTTCCCCGCAGAAC
R:
CACCTGCTGTTCAATCCACGA
Band lengths:
247-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]