RnoEX6003817 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163049206-163054999:-
Coord C1 exon
chr1:163054847-163054999
Coord A exon
chr1:163049756-163049940
Coord C2 exon
chr1:163049206-163049327
Length
185 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCTTGCTGCTTACAGACA
3' ss Score
8.04
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAACACTGGATTTCCCCTCAAAATGCCACGCACATCAAGCCAATGCACCCCACATCGGTGCATGGTGTGGAGGACATGATCCGCCTGGGGGATCTCAACGAGGCAGGCATTCTTCGAAACCTTCTCATTCGCTACCGGGACCATCTCATCTAC
Seq A exon
ACATACACGGGTTCCATCCTGGTGGCCGTGAACCCCTACCAGCTGCTGTCCATCTACTCGTCAGAGCACATCCGCCAGTATACCAACAAGAAGATAGGGGAGATGCCCCCCCACATCTTTGCCATTGCCGACAATTGCTACTTCAACATGAAACGCAACAACCGGGACCAGTGCTGTATCATCAG
Seq C2 exon
CGGGGAATCAGGAGCTGGCAAGACAGAGAGCACAAAGCTGATCCTGCAGTTCCTGGCGGCTATCAGTGGACAGCACTCATGGATCGAGCAGCAGGTGCTGGAGGCCACCCCGATCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'6-5,'6-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=54.9)
A:
PF0006316=Myosin_head=FE(9.2=100)
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Skipping Isoform:
ENSRNOT00000019053fB9273
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATTTCCCCTCAAAATGCC
R:
CTGCTGCTCGATCCATGAGTG
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]