GgaEX1038169 @ galGal3
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198154245-198162268:-
Coord C1 exon
chr1:198162116-198162268
Coord A exon
chr1:198155267-198155451
Coord C2 exon
chr1:198154245-198154366
Length
185 bp
Sequences
Splice sites
3' ss Seq
TCCATGTGCTTCTCCTCCAGACA
3' ss Score
9.26
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGCACTGGATTTCCCCGCAGAATGCCAGCCACATCAAACCCATGCACCCCACCTCCATCCATGGAGTGGAGGACATGATCCGGCTGGGGGACTTGAATGAGGCAGGAATCCTTAGGAACCTGCTGATCCGCTACCGGGAGCATCTCATCTAT
Seq A exon
ACATACACTGGTTCAATACTGGTGGCAGTAAACCCCTACCAGCTTCTACCCATCTATTCACCGGAGCAGATCCGCCTGTACACCAACAAAAAGATTGGGGAAATGCCACCACACATCTTTGCGATCGCTGACAACTGCTACTTCAACATGCAGCGCAACAACAAGGATCAGTGTTGTATCATAAG
Seq C2 exon
TGGTGAATCCGGGGCAGGGAAAACTGAAAGCACAAAACTGATTCTTCAGTTCCTGGCAGCGATCAGTGGTCAACACTCCTGGATTGAGCAGCAGGTCCTGGAGGCAAATCCCATCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'1-4,'1-3,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(4.2=54.9)
A:
PF0006316=Myosin_head=FE(9.2=100)
C2:
PF0006316=Myosin_head=FE(6.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGATTTCCCCGCAGAATG
R:
CTGCTGCTCAATCCAGGAGTG
Band lengths:
243-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]